Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs78104714 chr15:83381199 C/G 2.29E-6 493 30.97 31.02 29.17 KM Plot
PRAD rs7810503 chr7:135142285 T/C 1.76E-9 494 30.77 32.4 3.03 KM Plot
PRAD rs78117610 chr2:107442712 T/C 3.32E-5 491 30.97 30.27 32.63 KM Plot
PRAD rs7812917 chr8:1363663 C/G 4.46E-6 494 30.37 31.37 29.15 KM Plot
PRAD rs78152845 chr9:72931233 A/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs78164291 chr9:72934090 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs78220593 chr7:135166787 T/C 1.88E-9 492 30.53 32.63 3.03 KM Plot
PRAD rs78287203 chr4:187812211 A/G 2.17E-6 480 31.18 28.57 26.8 KM Plot
PRAD rs7828950 chr8:1705709 T/C 0.000163 481 45.12 28.8 30.78 KM Plot
PRAD rs78352203 chr7:157954629 G/A 0 491 31.18 30.63 20.87 KM Plot
PRAD rs78376604 chr1:202762491 C/A 6.71E-6 490 30.97 32.63 37.17 KM Plot
PRAD rs78380577 chr4:187812373 G/C 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs78430108 chr9:72843658 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs78435983 chr5:154218100 G/A 0 494 29.63 37.43 4.87 KM Plot
PRAD rs7844534 chr8:143428260 A/G 1.25E-5 490 30.3 31.43 28.77 KM Plot